Best Reptile-Safe Disinfectants

Written by Alan Lemus
Updated: May 27, 2024
© Holly S Cannon/Shutterstock.com

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Best forProduct
Best OverallFluker’s Super Scrub Reptile Cleaner
Best for Small CagesZoo Med Wipe Out 1
Best Concentrated OptionF10 SC Veterinary Disinfectant 
Best for Clearer GlassZilla Reptile Terrarium Cleaner
Best for Eliminating OdorNo Scent Pet Odor Eliminator & Cleaner

Although reptiles are often regarded as low-maintenance pets, they are susceptible to skin and bacterial infections if kept in an unclean enclosure. As a result, pet reptile owners should provide a clean and healthy environment for their pets and take the responsibility that comes with reptile ownership seriously. From daily cleaning of food and water dishes to using reptile-safe disinfectants, proper hygiene is critical to a reptile’s overall well-being. 

It’s crucial to understand that cleaning and disinfecting are two different processes. Cleaning can involve wiping away dirt and grime or cleaning with soap and hot water. The disinfection process requires a thorough cleaning of the entire cage and its content with special disinfectants. However, reptiles are very sensitive to certain chemicals, so you need to be extra careful about what you use. This is why we’ve researched the best reptile-safe disinfectants for you!

  1. Fluker's Super Scrub Reptile Cleaner
    • Safe and simple way to clean your pet reptile’s environment
    • Contains natural enzymes that aid in cleaning, freshening, and deodorizing
    • However, you may not be able to limit how much cleaner comes out of the brush
    Check Chewy Check Amazon
  2. Zoo Med Wipe Out 1
    • Protects against bacteria including salmonella
    • May need to use air to dissipate the smell
    • Safe for pets
    Check Chewy Check Amazon
  3. F10 SC Veterinary Disinfectant 
    • Chlorine and aldehyde-free formula
    • Safe for your reptile
    • Also effective against cryptosporidium, coccidia, and giardia
    Check Amazon
  4. Zilla Reptile Terrarium Cleaner
    • Made with natural ingredients
    • Reduces dust accumulation
    • Isn’t the best at eliminating stench
    Check Chewy Check Amazon
  5. No Scent Pet Odor Eliminator & Cleaner
    • This plant-based formula destroys proteins in reptile waste
    • Eco-friendly
    • Can be sprayed without endangering you or your pets
    Check Amazon

Top Picks: The Best Reptile-Safe Disinfectants Today

#1 Best Overall: Fluker’s Super Scrub Reptile Cleaner

The Fluker’s Super Scrub Reptile Cleaner is our best choice for reptile-safe disinfectant. With its added brush and organic cleaner, this product offers a safe and simple way to clean your pet reptile’s environment. The organic cleaner removes dirt and grime, you can clean the cage and its accessories with the built-in scrubber brush. 

This product contains natural enzymes that aid in the cleaning, freshening, and deodorizing of cages, branches, plastic vines, hot rocks, and bowls. When used regularly, this disinfectant can help to prevent the spread of bacterial infections in your pet’s enclosures.

The Fluker’s Super Scrub Reptile Cleaner allows for easy cleaning, but you may not be able to limit how much cleaner comes out of the brush. Several customers advise that you should keep the red stopper that comes with the bottle — you can put it back in when you want to scrub without more liquid coming out of the bottle. In addition, you’ll need to make sure that you store the bottle upright or it will leak.

Pros and Cons of the Fluker’s Super Scrub Reptile Cleaner

ProsCons
This disinfectant is non-toxic and safe for cleaning your pet’s enclosure.It can be hard to limit how much liquid comes out of the brush at a time.
It is organic with natural enzymes that are powerful to remove dirt, grime, and foul odors.The bottle must be stored upright or it will leak.
The bottle also has a built-in scrubber brush.
When used regularly, it can help to prevent the spread of bacterial infections in your pet’s enclosures.
Best Overall
Fluker's Super Scrub Reptile Cleaner
  • Safe and simple way to clean your pet reptile’s environment
  • Contains natural enzymes that aid in cleaning, freshening, and deodorizing
  • However, you may not be able to limit how much cleaner comes out of the brush
Check Chewy Check Amazon

2. Best for Small Cages: Zoo Med Wipe Out 1 

Want to get a disinfectant for a range of bacteria? The Zoo Med Wipe Out 1 is here to save the day. This ready-to-use cleaning agent is perfect for small animal cages and terrariums. It works as a liquid antibacterial cleaner, disinfectant, and deodorizer, providing broad-spectrum protection against bacteria including choleraeesis, salmonella, and Pseudomonas. It’s super easy to use — just spray and the disinfectant takes care of the rest!

You can use the Zoo Med Wipe Out 1 are often as you need to, although it is best to apply it at least once a week to maintain a clean and healthy living space for your pet. However, be sure to remove all objects, substrate, and pets from the enclosure before you start cleaning. Spray Wipe Out evenly across the terrarium or cage’s surface, then let it sit for five minutes and wipe it away. Once you’re done, let the habitat dry and make sure it is well-ventilated in the room before you put everything back into place.

This product does have a strong smell, so be sure that you use it in a well-ventilated area. Although the bottle is on the small side, customers report that it goes a long way, especially if you are using it for spot cleaning.

Pros and Cons of the Zoo Med Wipe Out 1

ProsCons
This product is ready to use and works as a liquid antibacterial cleaner, disinfectant, and deodorizer.You do need to remove objects, pets, and substrate from the enclosure before using this product.
It provides broad-spectrum protection against bacteria including choleraeesis, salmonella, and Pseudomonas.It has a rather strong smell so you’ll need to let it dry completely before returning pets and objects back to the enclosure.
You can use it as often as you need to.
It’s super easy to use; just spray, let it sit for five minutes, then wipe it away.
It comes in a small bottle but it goes a long way.
Best for Small Cages
Zoo Med Wipe Out 1
  • Protects against bacteria including salmonella
  • May need to use air to dissipate the smell
  • Safe for pets
Check Chewy Check Amazon

3. Best Concentrated Option: F10 SC Veterinary Disinfectant 

F10 SC Veterinary Disinfectant is a super-concentrated product that destroys a wide range of harmful microorganisms including bacteria, viruses, fungi, and spores. It is a Hospital Grade disinfectant, it is EPA approved, and it is effective against the protozoan oocysts of cryptosporidium, coccidia, and giardia.

The chlorine and aldehyde-free formula is an ideal pick for achieving a high level of biosecurity. It is biodegradable, non-corrosive, and non-toxic. It is incredibly safe, and you can use it on any surface or object after it’s diluted. This product can disinfect floors, racks, shelving, perches and toys, food preparation areas, and inside incubators.

The up-front cost is a bit more than other options, but this disinfectant lasts for a very, very long time. It comes in a small, concentrated bottle, so you will need to add water to dilute it. However, once diluted, you can spray it on any surface, and you don’t even need to worry about wiping or rinsing it off! In addition, this disinfectant does not leave any smells or odors behind. It is commonly used in veterinarian settings and helps to prevent the spread of diseases and infections. This product is great for reptiles but also can be used for any other pets you may have as well.

Pros and Cons of the F10 SC Veterinary Disinfectant 

ProsCons
It destroys a wide range of harmful microorganisms including bacteria, viruses, fungi, and spores, as well as the protozoan oocysts of cryptosporidium, coccidia, and giardia.The up-front cost is a little more than other options.
It’s a Hospital Grade disinfectant and is EPA approved.It is concentrated, so you will need to add water to dilute it.
This product is 100% safe for pets. It is biodegradable, non-corrosive, and non-toxic.
You can use it on any surface or object after it’s diluted.
Since it is concentrated, one bottle lasts for a very long time.
Once diluted, you can spray it on any surface, and you don’t even need to worry about wiping or rinsing it off.
This disinfectant does not leave any smells or odors behind.
It is commonly used in veterinarian settings and helps to prevent the spread of diseases and infections.
This product is great for all kinds of pets.
Best Concentrated Option
F10 SC Veterinary Disinfectant 
  • Chlorine and aldehyde-free formula
  • Safe for your reptile
  • Also effective against cryptosporidium, coccidia, and giardia
Check Amazon

4. Best for Clear Glass: Zilla Reptile Terrarium Cleaner

Thanks to its non-toxic deodorizer and anti-static ingredients, Zilla Reptile Terrarium Cleaner reduces dust accumulation and adds a bright luster to glass, acrylic, or any other hard, shiny, non-absorbent surface. This gives you a clearer view of your pet pal and keeps their habitat clean. Made with natural ingredients, this product does not have any residues, toxins, or fumes and is 100% safe for your reptile.

The Zilla Reptile Terrarium Cleaner is made to clear up the glass of your reptile enclosure so that you can see and enjoy your pet. However, it is not a disinfectant, so you will need an additional cleaner for that. In addition, it isn’t the best at eliminating stench, although it does help somewhat.

Pros and Cons of the Zilla Reptile Terrarium Cleaner

ProsCons
This product is anti-static and reduces dust accumulation on glass and other hard surfaces.This is not a disinfectant.
It also adds a bright luster and gives you a clearer view of your pet inside their habitat.It does have some deodorizing qualities, but isn’t the best product for eliminating stench.
It is made with natural ingredients and does not have any residues, toxins, or fumes.
It is 100% safe for your reptile.
Best for Clearer Glass
Zilla Reptile Terrarium Cleaner
  • Made with natural ingredients
  • Reduces dust accumulation
  • Isn’t the best at eliminating stench
Check Chewy Check Amazon

5. Best for Eliminating Odor: No Scent Pet Odor Eliminator & Cleaner

The No Scent Pet Odor Eliminator & Cleaner is a plant-based formula with a high concentration of bacteria that destroys proteins and is made to work with the pH of reptile urine. Reptiles produce more protein in their waste as a result of their diet. This cleaner goes after the source of the odor and organically destroys the offending compounds.

This product is totally sustainable, 100% environmentally friendly, and doesn’t have any harmful chemicals in it. In addition, you don’t need a lot of it, and it keeps working for longer than other similar products. The added bacteria keeps on working even after you use the spray, helping to get rid of bothersome smells.

As an all-natural product, it can be sprayed directly onto terrariums, tanks, floors, and walls without endangering you and your beloved pets. You don’t have to take out your pet or their food from the enclosure before using this product because it is 100% safe. Customers report that it makes a huge difference in the smell of their tank and removes bad odors immediately. However, some users said that you will need to use it daily (or at least spot clean) for the product to fully remove odors. This was particularly the case with bearded dragons.

Pros and Cons of the No Scent Pet Odor Eliminator & Cleaner

ProsCons
This is an all-natural, plant-based formula that is totally sustainable, 100% environmentally friendly, and doesn’t use any harmful chemicals in it.Some customers said that you will need to use it daily (or at least spot clean) for the product to fully remove odors.
It uses a high concentration of bacteria that destroys proteins and is made to work with the pH of reptile urine. The added bacteria keeps on working even after you use the spray, helping to get rid of bothersome smells.A few customers reported that it didn’t work as well with bearded dragons.
You don’t need a lot of product, and it keeps working for longer than other similar products.
Customers report that it makes a huge difference in the smell of their tank and removes bad odors immediately.
You don’t have to take out your pet or their food from the enclosure before using this product.
Best for Eliminating Odor
No Scent Pet Odor Eliminator & Cleaner
  • This plant-based formula destroys proteins in reptile waste
  • Eco-friendly
  • Can be sprayed without endangering you or your pets
Check Amazon

Choosing the Best: What to Look For

When it comes to choosing a safe disinfectant for your reptile, it’s important to remember that not all disinfectants are made equal. Here are some factors you should consider when selecting a disinfectant to ensure your reptile’s safety and hygiene:

  • Form
  • Non-toxic
  • Prevention
  • Surface type

Form

There’s a vast selection of cleaning and disinfecting products in the market that come in many forms. For example, there are liquid disinfectants, concentrates, powders, sprays, and even disinfectant wipes. Think about what you will need to be cleaning and what works best for you and your pet.

Non-Toxic

Whatever disinfectant you choose, you’ll of course want to make sure that it is safe for your pet, as well as for humans. There are many types of non-toxic disinfectants out there, from all-natural to plant-based to ones with strong bacteria and enzymes.

Prevention

When choosing a disinfectant for your reptile, you’ll want to make sure that it works to prevent pesky pathogens that may be lurking in the enclosure. It’s important to note that not all disinfectants offer the same amount of effectiveness against all pathogens. Some products may be great for eliminating one pathogen while being less efficient against others, so be sure to read the product labels and research what your pet needs. Pathogens that are common in reptile enclosures include:

  • Salmonella
  • Pseudomonas
  • Mycobacterium avium complex (MAC)
  • Cryptosporidium
  • Giardia lamblia
  • Clostridium difficile

Surface type

By now, you’re aware that disinfectants work for varying types of surfaces. Choose a product based on the surfaces within your reptile’s habitat. You may want a cleaner that keeps the glass on your reptile’s enclosure clean and clear so you can see your pet. But the objects and base of your enclosure may need a different product.

Best forProduct
Best OverallFluker’s Super Scrub Reptile Cleaner
Best for Small CagesZoo Med Wipe Out 1
Best Concentrated OptionF10 SC Veterinary Disinfectant 
Best for Clearer GlassZilla Reptile Terrarium Cleaner
Best for Eliminating OdorNo Scent Pet Odor Eliminator & Cleaner
About the Author

Alan is a freelance writer and an avid traveler. He specializes in travel content. When he visits home he enjoys spending time with his family Rottie, Opie.

Best Reptile-Safe Disinfectants FAQs (Frequently Asked Questions) 

What are reptile-safe disinfectants?

Reptile-safe disinfectants are cleaning products that are specifically designed to kill bacteria and viruses that can harm reptiles, without harming the reptiles themselves. These disinfectants are formulated with ingredients that are non-toxic and safe for reptiles.

Why should I use reptile-safe disinfectants?

Reptiles are highly susceptible to bacterial and viral infections, as well as skin problems. Their enclosures need to be cleaned regularly to keep them healthy and prevent infections and disease. However, using regular disinfectants can harm or even kill reptiles. Reptile-safe disinfectants are specially formulated to kill harmful bacteria and viruses while being safe for reptiles. Using reptile-safe disinfectants can help prevent illness and promote a healthy environment for your reptiles.

Are there any precautions I should take when using reptile-safe disinfectants?

Yes, it is important to follow the instructions on the label carefully and use the disinfectant in a well-ventilated area. Avoid getting the disinfectant in your eyes or mouth, and wear gloves if necessary.

Is Lysol spray safe for reptiles?

NO! Products like Lysol and Pine-Sol are highly toxic to reptiles and should never be used in their enclosures.

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